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Changelog

Source: NEWS.md

ecodive 2.1.0

CRAN release: 2025-09-26

Breaking Changes

  • rescale parameter is superseded by norm parameter.

Fixes

  • alpha_div() and beta_div() will only forward applicable parameters.
  • No longer crashes when pairs = integer(0).
  • pseudocount = NULL correctly selects smallest non-zero count.

ecodive 2.0.0

CRAN release: 2025-09-21

Breaking Changes

  • Input matrix is now samples as rows.
  • Removed weighted parameter.

Added New Diversity Methods

  • Updated Alpha Options: c("ace", "berger", "brillouin", "chao1", "faith", "fisher", "simpson", "inv_simpson", "margalef", "mcintosh", "menhinick", "observed", "shannon", "squares")

  • Updated Beta Options: c("aitchison", "bhattacharyya", "bray", "canberra", "chebyshev", "chord", "clark", "sorensen", "divergence", "euclidean", "generalized_unifrac", "gower", "hamming", "hellinger", "horn", "jaccard", "jensen", "jsd", "lorentzian", "manhattan", "matusita", "minkowski", "morisita", "motyka", "normalized_unifrac", "ochiai", "psym_chisq", "soergel", "squared_chisq", "squared_chord", "squared_euclidean", "topsoe", "unweighted_unifrac", "variance_adjusted_unifrac", "wave_hedges", "weighted_unifrac")

ecodive 1.0.0

CRAN release: 2025-08-22

  • This is the first release of ecodive.