Can now disable rarefaction in write.xlsx().
Support for ‘Decontam’ generated BIOM files.
Rarefy now handles samples and taxa with zero observations.
write.xlsx exports ‘dist’ and ‘matrix’ attributes in addition to ’data.frame’s
Optionally change e.g. “Bacteria; Gracilibacteria; c” into “Bacteria; Gracilibacteria; Phylum Gracilibacteria (c)”
Improved compatibility with Debian and Solaris.
The ‘rhdf5’ package is now an optional dependency.
The select() and subset() functions now subset sequences too.