Global Enteric Multicenter Study (n = 1,006)
Format
An rbiom object with 1,006 samples. Includes metadata and taxonomy.
- diarrhea -
Case or Control
- age -
0 - 4.8 (years old)
- country -
Bangladesh, Gambia, Kenya, or Mali
Examples
gems
#>
#> ══ Global Enteric Multicenter Study ════════════════════════
#>
#> Stool samples collected from 1006 participants under the
#> age of 5 from Bangladesh, Gambia, Kenya, and Mali. Includes
#> 492 healthy controls and 514 moderate-to-severe diarrhea
#> (MSD) cases. Original study by Pop et al, 2014
#> (<https://doi.org/10.1186/gb-2014-15-6-r76>); dataset
#> retrieved from MicrobiomeDB
#> (<https://doi.org/10.1093/nar/gkx1027>).
#>
#> 1006 Samples: SRS608640, SRS608279, SRS607780, ...
#> 767 OTUs: OTU001, OTU002, OTU003, ..., and OTU767
#> 8 Ranks: .otu, Kingdom, Phylum, ..., and Species
#> 4 Fields: .sample, diarrhea, age, and country
#> Tree: <absent>
#>
#> ── 116 - 11k reads/sample ──────────────────── 2021-03-15 ──
#>
table(gems$metadata$country)
#>
#> Bangladesh Gambia Kenya Mali
#> 215 272 307 212