Human Microbiome Project - demo dataset (n = 50)
Format
An rbiom object with 50 samples. Includes metadata, taxonomy, phylogeny, and sequences.
- Sex -
Male or Female
- Body Site -
Anterior nares, Buccal mucosa, Mid vagina, Saliva, or Stool
- Age -
21 - 40
- BMI -
19 - 32
Examples
hmp50
#>
#> ══ Human Microbiome Project - 50 Sample Demo ═══════════════
#>
#> Oral, nasal, vaginal, and fecal samples from a diverse set
#> of healthy volunteers. Source: Human Microbiome Project
#> (<https://hmpdacc.org>).
#>
#> 50 Samples: HMP01, HMP02, HMP03, ..., and HMP50
#> 490 OTUs: Unc01yki, Unc53100, LtbAci52, ...
#> 7 Ranks: .otu, Kingdom, Phylum, ..., and Genus
#> 5 Fields: .sample, Age, BMI, Body Site, and Sex
#> Tree: <present>
#>
#> ── 182 - 22k reads/sample ──────────────────── 2023-09-22 ──
#>
hmp50$metadata
#> # A tibble: 50 × 5
#> .sample Age BMI `Body Site` Sex
#> * <chr> <dbl> <dbl> <fct> <fct>
#> 1 HMP01 22 20 Buccal mucosa Female
#> 2 HMP02 24 23 Buccal mucosa Male
#> 3 HMP03 28 26 Saliva Male
#> 4 HMP04 25 23 Saliva Male
#> 5 HMP05 27 24 Buccal mucosa Female
#> 6 HMP06 32 25 Saliva Male
#> 7 HMP07 26 22 Buccal mucosa Male
#> 8 HMP08 27 26 Saliva Female
#> 9 HMP09 33 32 Saliva Male
#> 10 HMP10 22 20 Anterior nares Female
#> # ℹ 40 more rows